| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Eleanor H. Miller School | 156 HORSEMAN CLUB RD | 975 | PK-12 |
| Florida Of The Arts High At St. Johns Community College Pg School | (INACTIVE 10/02) | 20 | 11-12 |
| James A. Long Elementary School | 1400 OLD JACKSONVILLE HWY | 223 | - |
| Kelley Smith Elementary School | 141 KELLEY SMITH SCHOOL RD | 597 | - |
| Mellon Elementary School | 301 MELLON RD | 355 | - |
| Migrant Non-Enrolled Students School | 200 S 7TH ST | - | - |
| Palatka High School | 302 MELLON RD | 61 | 9-12 |
| Putnam County Adult Education Center School | 200 S 7TH ST CAMPBELL ADM BLDG | 1,018 | - |
| Putnam County Exceptional Education School | 156 HORSEMAN CLUB RD | 202 | 5-12 |
| Putnam County Exceptional Education School | 156 HORSEMAN CLUB RD | 202 | 5-12 |
| Putnam County Superintendent's Office School | 200 S 7TH ST | 23 | - |
| Riverbreeze Elementary School | 1100 HUSSON AVE | 308 | - |
| Robert H. Jenkins, Junior Middle School | 1100 N 19TH ST | 527 | 6-8 |
| W. H. Beasley Middle School | 1100 S 18TH ST | 316 | 6-8 |
| William D. Moseley Elementary School | 1001 HUSSON AVE | 534 | - |
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