| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Batavia City District School | PO BOX 677 | - | - |
| Batavia High School | 260 STATE ST | 724 | 9-12 |
| Batavia Middle School | 96 ROSS ST | 522 | 6-8 |
| Jackson School | 411 S JACKSON ST | 389 | PK-5 |
| John Kennedy School | 166 VINE ST | 387 | K-5 |
| Notre Dame High School | 73 UNION ST | 239 | 9-12 |
| Robert Morris School | 80 UNION ST | 408 | PK-5 |
| Saint Joseph School | 2 SUMMIT ST | 307 | PK-8 |
| St Paul Lutheran School | 31 WASHINGTON AVE | 52 | PK-5 |
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