| Name | Address | Enrollment | Grade span |
|---|---|---|---|
| Coppergate Elementary School | 2250 COUNTY RD 209 N | 292 | PK-6 |
| Doctors Inlet Elementary School | 2634 COUNTY RD 220 | 112 | PK-6 |
| J.L. Wilkinson Elementary School | 4965 COUNTY RD 218 | 1,509 | PK-6 |
| Middleburg Elementary School | 3958 MAIN ST | 404 | K-6 |
| Middleburg High School | 3750 COUNTY RD 220 | 749 | 9-12 |
| Rideout Elementary School | 3065 APALACHICOLA BLVD | 1,092 | PK-6 |
| Swimming Pen Creek Elementary School | 1630 WOODPECKER LANE | 213 | PK-6 |
| Tynes Elementary School | 1550 TYNES BLVD | 1,463 | PK-6 |
| Wilkinson Junior High School | 5025 COUNTY RD 218 W | 663 | 7-8 |
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