| Landmark High School | 351 W 18TH ST | 452 | 9-12 |
| Lars Academy Charter School | 23 W 85TH ST-APT 1A | - | - |
| Launch Expeditionary Learning Charter School | 52 CHAMBERS ST-NYC CS OFFICE | - | - |
| Leadership & Public Service High School | 90 TRINITY PL | 650 | 9-12 |
| Leadership Village Academy Charter School | 2351 1ST AVE-4TH FL | 289 | 5-9 |
| Learningspring School | 247 E 20TH ST | - | - |
| Legacy For Integrated Studies School | 34 W 14TH ST | 394 | 9-12 |
| Liberty High Academy For Newcomers School | 250 W 18TH ST | 420 | 9-12 |
| Life Sciences Secondary School | 320 E 96TH ST | 702 | 6-12 |
| Little Red House-Elisabeth Irwin High School | 272 6TH AVE | - | - |
| Lorge (The) School | 353 W 17TH ST | - | - |
| Louis D Brandeis High School | 145 W 84TH ST | 1,569 | 9-12 |
| Lower East Side Preparatory High School | 145 STANTON ST-4TH FL | 551 | 10-12 |
| Lower Manhattan Arts Academy School | 350 GRAND ST | 311 | 9-12 |
| Lower Manhattan Community Middle School | 26 BROADWAY-6TH FL | 211 | 6-8 |
| Loyola School | 980 PARK AVE | 208 | 9-12 |
| Lycee Francais De New York School | 505 E 75TH ST | 1,006 | PK-12 |
| Lyceum Kennedy School | 225 E 43RD ST | 195 | PK-11 |
| Manhattan Academy For Arts And Languages School | 52 BROADWAY | - | - |
| Manhattan Bridges High School | 525 W 50TH ST | 509 | 9-12 |
| Manhattan Business Academy School | 351 W 18TH ST | 122 | 9 |
| Manhattan Center For Science & Mathematics School | 260 PLEASANT AVE | 1,696 | 9-12 |
| Manhattan Charter School | 100 ATTORNEY ST | 234 | K-5 |
| Manhattan Christian Academy School | 401 W 205TH ST | 308 | PK-8 |
| Manhattan Comprehensive Night And Day High School | 240 2ND AVE | 26 | 10-12 |
| Manhattan Country School | 7 E 96TH ST | 192 | K-8 |
| Manhattan Day School | 310 W 75TH ST | 342 | PK-8 |
| Manhattan For Career Development School | 113 E 4TH ST | 248 | 9-12 |
| Manhattan Free School | 215 E 6TH ST | - | - |
| Manhattan High For Girls School | 154 E 70TH ST | 175 | 9-12 |
| Manhattan High School | 122 AMSTERDAM AVE | - | - |
| Manhattan International High School | 317 E 67TH ST | 309 | 9-12 |
| Manhattan Theatre Lab High School | 122 ANSTERDAM AVE | 397 | 9-12 |
| Manhattan Village Academy School | 43 W 22ND ST | 449 | 9-12 |
| Manhattan/Hunter Science High School | 122 AMSTERDAM AVE | 437 | 9-12 |
| Marta Valle Secondary School | 145 STANTON ST | 352 | 9-12 |
| Marymount Of New York School | 1026 5TH AVE | 513 | PK-12 |
| Mccarton (The) School | 331 W 25TH ST | - | - |
| Medical Division-Department Of Personnel School | 65 COURT STREET | - | - |
| Mesivta Tifereth Jerusalem School | 145 E BROADWAY | 172 | K-12 |
| Metropolitan Montessori School | 325 W 85TH ST | 188 | PK-6 |
| Middle 322 School | 4600 BROADWAY | 490 | 6-8 |
| Millennium High School | 75 BROAD ST | 619 | 9-12 |
| Mother Cabrini High School | 701 FT WASHINGTON AVE | 466 | 9-12 |
| Mott Hall High School | 6 EDGECOMBE AVE | 408 | 9-12 |
| Mott Hall Ii School | 234 W 109TH ST | 290 | 6-8 |
| Mount Carmel-Holy Rosary School | 371 PLEASANT AVE | 242 | PK-8 |
| Mount Pleasant Christian Academy School | 2011 ADAM CLAYTON POWELL JR BLVD | - | - |
| Ms 131 School | 100 HESTER ST | 793 | 6-8 |
| Ms 224 Manhattan East For Arts & Academics School | 410 E 100TH ST | 259 | 6-8 |
| Ms 243 Center School | 100 W 84TH ST-RM 310 | 210 | 5-8 |
| Ms 245 The Computer School | 100 W 77TH ST | 395 | 6-8 |
| Ms 247 Dual Language Middle School | 32 W 92ND ST | 192 | 6-8 |
| Ms 250 West Side Collaborative Middle School | 735 W END AVE | 185 | 6-8 |
| Ms 255 Salk Of Science School | 320 E 19TH ST | 406 | 6-8 |
| Ms 256 Academic And Athletic Excellence School | 154 W 93RD ST | 185 | 6-8 |
| Ms 260 Clinton Writers & Artists School | 425 W 33RD ST | 269 | 6-8 |
| Ms 319 Marie Teresa School | 21 JUMEL PL | 538 | 6-8 |
| Ms 321 Minerva School | 21 JUMEL PL | 176 | 7-8 |
| Ms 324 Patria Mirabal School | 21 JUMEL PL | 423 | 6-8 |
| Ms 326 Writers Today & Leaders Tomorrow School | 401 W 164TH ST | 373 | 6-8 |
| Ms 328 Manhattan Middle For Scientific Inquiry School | 401 W 164TH ST | 437 | 6-8 |
| Ms 45/Stars Prep Academy School | 2351 1ST AVE | 358 | 6-8 |
| Murray Hill Academy School | 111 E 33RD ST | - | - |
| Murry Bergtraum High For Business Careers School | 411 PEARL ST | 2,570 | 9-12 |
| Muscota School | 4862 BROADWAY | 263 | K-5 |
| Nativity Mission Center School | 204 FORSYTH ST | 55 | 6-8 |
| Nazareth Nursery School | 216 W 15TH ST | 49 | PK-K |
| Neighborhood School | 121 E 3RD ST | 310 | PK-5 |
| New Design High School | 350 GRAND ST | 412 | 9-12 |
| New Explorations Into Science,Tech And Math School | 111 COLUMBIA ST | 1,480 | K-12 |
| New Heights Academy Charter School | 1818 AMSTERDAM AVE | 750 | 5-12 |
| New York Center For Autism Charter School | 433 E 100TH ST | 28 | - |
| New York City Geographic District # 1 School | 166 ESSEX ST | - | - |
| New York City Geographic District # 2 School | 333 7TH AVE-7TH FL | - | - |
| New York City Geographic District # 3 School | 501 W 165TH ST | - | - |
| New York City Geographic District # 4 School | 319 E 117TH ST | - | - |
| New York City Geographic District # 5 School | 425 W 123RD ST | - | - |
| New York City Geographic District # 6 School | 4360 BROADWAY-RM 527 | - | - |
| New York French-American Charter School | 311 W 120TH ST | - | - |
| New York Harbor School | 10 SOUTH ST-SLIP 7 | - | - |
| Nightingale Bamford School | 20 E 92ND ST | 560 | K-12 |
| Norman Thomas High School | 111 E 33RD ST | 2,147 | 9-12 |
| Northeastern Academy School | 532 W 215TH ST | - | - |
| Notre Dame School | 327 W 13TH ST | 229 | 9-12 |
| Nyc Chancellor's Office School | 52 CHAMBERS ST-RM 320 | - | - |
| Nyc Lab High For Collaborative Studies School | 333 W 17TH ST | 520 | 9-12 |
| Nyc Lab Ms For Collaborative Studies School | 333 W 17TH ST | 562 | 6-8 |
| Nyc Museum School | 333 W 17TH ST | 467 | 9-12 |
| Nyc Special - District 75 School | 400 FIRST AVE | - | - |
| Nysarc, Inc-New York City Chapter School | 83 MAIDEN LN-7TH FL | 323 | PK-K |
| Office For Inter-Governmental Affairs School | 52 CHAMBERS ST | - | - |
| Office Of Collaborative Dropout Prevention School | 100 ATTORNEY ST | - | - |
| Office Of Special Investigations School | 49 CHAMBER ST | - | - |
| Office Of Strategic Partnership School | 52 CHAMBERS ST | - | - |
| Office Of The Chief Financial Officer School | 52 CHAMBERS ST | - | - |
| Office Of The Deputy Chancellor For Instruction School | 52 CHAMBERS ST | - | - |
| Office Of The Deputy Chancellor For Operations School | 52 CHAMBERS ST | - | - |
| Office Of Youth Development & Community Services School | 52 CHAMBERS ST | - | - |
| Opportunity Charter School | 240 W 113TH ST-3RD FL | 409 | 6-12 |